Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002850.1 Corchorus capsularis cultivar CVL-1 contig02858, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 630

Length: 1051
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28


Found at i:545 original size:28 final size:28

Alignment explanation


    Indices: 505--568  Score: 101
    Period size: 28  Copynumber: 2.3  Consensus size: 28

        495 CCAGGACGTC

                            *           
        505 TCCTTCTGGTATATCAGGCGAAAAATCT
          1 TCCTTCTGGTATATCAAGCGAAAAATCT

                                *       
        533 TCCTTCTGGTATATCAAGCGGAAAATCT
          1 TCCTTCTGGTATATCAAGCGAAAAATCT

               *    
        561 TCCCTCTG
          1 TCCTTCTG

        569 ATATGTCACA


Statistics
Matches: 33,  Mismatches: 3, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   33  1.00

ACGTcount: A:0.25, C:0.25, G:0.17, T:0.33


Consensus pattern (28 bp):   
TCCTTCTGGTATATCAAGCGAAAAATCT
Done.