Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002858.1 Corchorus capsularis cultivar CVL-1 contig02866, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 678

Length: 1130
ACGTcount: A:0.29, C:0.19, G:0.18, T:0.35


Found at i:676 original size:21 final size:21

Alignment explanation


    Indices: 651--691  Score: 55
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        641 TATGACTCAT

                                 
        651 ATGCTATGAATGCTATGATTG
          1 ATGCTATGAATGCTATGATTG

                 *     *  *     
        672 ATGCTTTGAATTCTTTGATT
          1 ATGCTATGAATGCTATGATT

        692 TGCTTGATTT


Statistics
Matches: 17,  Mismatches: 3, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  21   17  1.00

ACGTcount: A:0.24, C:0.10, G:0.20, T:0.46


Consensus pattern (21 bp):   
ATGCTATGAATGCTATGATTG
Done.