Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000288.1 Corchorus capsularis cultivar CVL-1 contig00288, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8643
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.33


Found at i:4837 original size:27 final size:26

Alignment explanation


    Indices: 4771--4844  Score: 114
    Period size: 26  Copynumber: 2.8  Consensus size: 26

       4761 ATTAATAAGA

                          *           
       4771 TATTTTATTTAGAATAATTCAAATTT
          1 TATTTTATTTAGAAAAATTCAAATTT

                                      
       4797 TATTTTATTTAGAAAAATTCAAATTT
          1 TATTTTATTTAGAAAAATTCAAATTT

                   *               
       4823 TATTTTTTTTTAG-AAAATTCAA
          1 TA-TTTTATTTAGAAAAATTCAA

       4845 TTCCTACAGT


Statistics
Matches: 45,  Mismatches: 2, Indels: 2
        0.92            0.04        0.04

Matches are distributed among these distances:
  26   36  0.80
  27    9  0.20

ACGTcount: A:0.39, C:0.04, G:0.04, T:0.53


Consensus pattern (26 bp):   
TATTTTATTTAGAAAAATTCAAATTT
Done.