Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002890.1 Corchorus capsularis cultivar CVL-1 contig02898, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 628

Length: 1048
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28


Found at i:708 original size:17 final size:19

Alignment explanation


    Indices: 686--721  Score: 58
    Period size: 17  Copynumber: 2.0  Consensus size: 19

        676 CCAATGTCTT

                               
        686 CTAAACTAA-ATA-AATAA
          1 CTAAACTAAGATAGAATAA

                               
        703 CTAAACTAAGATAGAATAA
          1 CTAAACTAAGATAGAATAA

        722 AAGGCCCAAT


Statistics
Matches: 17,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  17    9  0.53
  18    3  0.18
  19    5  0.29

ACGTcount: A:0.61, C:0.11, G:0.06, T:0.22


Consensus pattern (19 bp):   
CTAAACTAAGATAGAATAA
Done.