Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002894.1 Corchorus capsularis cultivar CVL-1 contig02902, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2098
ACGTcount: A:0.40, C:0.14, G:0.21, T:0.25


Found at i:1302 original size:5 final size:5

Alignment explanation


    Indices: 1289--1331  Score: 68
    Period size: 5  Copynumber: 8.4  Consensus size: 5

       1279 ATTGCATTTT

                *                                              
       1289 AAAAA AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAGAAG AA
          1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AA-AAG AA

       1332 GGATACAGCT


Statistics
Matches: 36,  Mismatches: 1, Indels: 1
        0.95            0.03        0.03

Matches are distributed among these distances:
   5   31  0.86
   6    5  0.14

ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00


Consensus pattern (5 bp):   
AAAAG

Done.