Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002896.1 Corchorus capsularis cultivar CVL-1 contig02904, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2291
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28


Found at i:500 original size:12 final size:13

Alignment explanation


    Indices: 478--506  Score: 51
    Period size: 12  Copynumber: 2.3  Consensus size: 13

        468 AAGGAATAGA

                         
        478 CAATCAATCAAAG
          1 CAATCAATCAAAG

                         
        491 CAAT-AATCAAAG
          1 CAATCAATCAAAG

                
        503 CAAT
          1 CAAT

        507 GCAAGGAAGA


Statistics
Matches: 16,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.55, C:0.21, G:0.07, T:0.17


Consensus pattern (13 bp):   
CAATCAATCAAAG
Done.