Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002899.1 Corchorus capsularis cultivar CVL-1 contig02907, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 926

Length: 1544
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35


Found at i:747 original size:28 final size:28

Alignment explanation


    Indices: 715--787  Score: 110
    Period size: 28  Copynumber: 2.6  Consensus size: 28

        705 GGGTCATCCA

                                        
        715 GGGGCATTTTGGTCATTTTCACATCTAG
          1 GGGGCATTTTGGTCATTTTCACATCTAG

                               **   *   
        743 GGGGCATTTTGGTCATTTTTGCATTTAG
          1 GGGGCATTTTGGTCATTTTCACATCTAG

                *            
        771 GGGGTATTTTGGTCATT
          1 GGGGCATTTTGGTCATT

        788 CTTAATCTAT


Statistics
Matches: 41,  Mismatches: 4, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  28   41  1.00

ACGTcount: A:0.15, C:0.12, G:0.29, T:0.44


Consensus pattern (28 bp):   
GGGGCATTTTGGTCATTTTCACATCTAG
Done.