Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002905.1 Corchorus capsularis cultivar CVL-1 contig02913, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 915

Length: 1525
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38


Found at i:714 original size:128 final size:129

Alignment explanation


    Indices: 452--715  Score: 512
    Period size: 129  Copynumber: 2.1  Consensus size: 129

        442 TTATGTTCCC

                 *                                                           
        452 AATTTTATCAGTTCCCTTATTTAAATTGTAGTGTTGTTTATATATTATTATACTATATATGTAAG
          1 AATTTAATCAGTTCCCTTATTTAAATTGTAGTGTTGTTTATATATTATTATACTATATATGTAAG

                                                                            
        517 AAAAAACCTATCCCTTATTTAAATTTCTTTCCATCATATGACTAGCAAATTTGAGATTTCTGTA
         66 AAAAAACCTATCCCTTATTTAAATTTCTTTCCATCATATGACTAGCAAATTTGAGATTTCTGTA

                                                                             
        581 AATTTAATCAGTTCCCTTATTTAAATTGTAGTGTTGTTTATATATTATTATACTATATATGTAAG
          1 AATTTAATCAGTTCCCTTATTTAAATTGTAGTGTTGTTTATATATTATTATACTATATATGTAAG

                                                                            
        646 AAAAAA-CTATCCCTTATTTAAATTTCTTTCCATCATATGACTAGCAAATTTGAGATTTCTGTA
         66 AAAAAACCTATCCCTTATTTAAATTTCTTTCCATCATATGACTAGCAAATTTGAGATTTCTGTA

                   
        709 AATTTAA
          1 AATTTAA

        716 ATTTGTTAAT


Statistics
Matches: 134,  Mismatches: 1, Indels: 1
        0.99            0.01        0.01

Matches are distributed among these distances:
 128   64  0.48
 129   70  0.52

ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45


Consensus pattern (129 bp):   
AATTTAATCAGTTCCCTTATTTAAATTGTAGTGTTGTTTATATATTATTATACTATATATGTAAG
AAAAAACCTATCCCTTATTTAAATTTCTTTCCATCATATGACTAGCAAATTTGAGATTTCTGTA

Done.