Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002909.1 Corchorus capsularis cultivar CVL-1 contig02917, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 963

Length: 1605
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28


Found at i:1178 original size:15 final size:15

Alignment explanation


    Indices: 1158--1187  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

       1148 ATCAGGCTGC

                      *    
       1158 CACGATACACGATAT
          1 CACGATACACAATAT

                           
       1173 CACGATACACAATAT
          1 CACGATACACAATAT

       1188 TTCAACCGAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  15   14  1.00

ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20


Consensus pattern (15 bp):   
CACGATACACAATAT
Done.