Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000291.1 Corchorus capsularis cultivar CVL-1 contig00291, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 800

Length: 1334
ACGTcount: A:0.36, C:0.14, G:0.16, T:0.34


Found at i:498 original size:27 final size:27

Alignment explanation


    Indices: 468--536  Score: 111
    Period size: 27  Copynumber: 2.6  Consensus size: 27

        458 AGGTGAACCT

                     *                 
        468 AAAAATGACTAAAATGCCCCTGAGTAC
          1 AAAAATGACCAAAATGCCCCTGAGTAC

                                  *  * 
        495 AAAAATGACCAAAATGCCCCTGGGTGC
          1 AAAAATGACCAAAATGCCCCTGAGTAC

                           
        522 AAAAATGACCAAAAT
          1 AAAAATGACCAAAAT

        537 ACCCTTGGAC


Statistics
Matches: 39,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  27   39  1.00

ACGTcount: A:0.46, C:0.22, G:0.16, T:0.16


Consensus pattern (27 bp):   
AAAAATGACCAAAATGCCCCTGAGTAC
Done.