Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002916.1 Corchorus capsularis cultivar CVL-1 contig02924, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1817
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30


Found at i:1334 original size:16 final size:16

Alignment explanation


    Indices: 1313--1361  Score: 89
    Period size: 16  Copynumber: 3.1  Consensus size: 16

       1303 ATTGGATTTA

                            
       1313 GTTTTAGATGTATCTG
          1 GTTTTAGATGTATCTG

                           *
       1329 GTTTTAGATGTATCTA
          1 GTTTTAGATGTATCTG

                            
       1345 GTTTTAGATGTATCTG
          1 GTTTTAGATGTATCTG

             
       1361 G
          1 G

       1362 ATTTCTTCAA


Statistics
Matches: 31,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   31  1.00

ACGTcount: A:0.20, C:0.06, G:0.24, T:0.49


Consensus pattern (16 bp):   
GTTTTAGATGTATCTG
Done.