Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002917.1 Corchorus capsularis cultivar CVL-1 contig02925, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 684

Length: 1140
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.33


Found at i:489 original size:21 final size:19

Alignment explanation


    Indices: 463--508  Score: 67
    Period size: 21  Copynumber: 2.4  Consensus size: 19

        453 CCCTCACCCA

                                 
        463 ATTTTTTTAAAAAATATATAT
          1 ATTTTTTTAAAAAA-A-ATAT

                               
        484 ATTTTTTTAAAAAAAATAT
          1 ATTTTTTTAAAAAAAATAT

                   
        503 -TTTTTT
          1 ATTTTTT

        509 AATCAAAATG


Statistics
Matches: 25,  Mismatches: 0, Indels: 3
        0.89            0.00        0.11

Matches are distributed among these distances:
  18    6  0.24
  19    4  0.16
  20    1  0.04
  21   14  0.56

ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57


Consensus pattern (19 bp):   
ATTTTTTTAAAAAAAATAT

Found at i:517 original size:17 final size:17

Alignment explanation


    Indices: 463--510  Score: 60
    Period size: 17  Copynumber: 2.6  Consensus size: 17

        453 CCCTCACCCA

                                 
        463 ATTTTTTTAAAAAATATATAT
          1 ATTTTTTT-AAAAA-A-A-AT

                             
        484 ATTTTTTTAAAAAAAAT
          1 ATTTTTTTAAAAAAAAT

                      
        501 ATTTTTTTAA
          1 ATTTTTTTAA

        511 TCAAAATGTA


Statistics
Matches: 27,  Mismatches: 0, Indels: 4
        0.87            0.00        0.13

Matches are distributed among these distances:
  17   12  0.44
  18    1  0.04
  19    1  0.04
  20    5  0.19
  21    8  0.30

ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54


Consensus pattern (17 bp):   
ATTTTTTTAAAAAAAAT
Done.