Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002923.1 Corchorus capsularis cultivar CVL-1 contig02931, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 705

Length: 1175
ACGTcount: A:0.29, C:0.14, G:0.19, T:0.38


Found at i:725 original size:7 final size:7

Alignment explanation


    Indices: 713--748  Score: 65
    Period size: 7  Copynumber: 5.3  Consensus size: 7

        703 TTGTTTCGTA

                   
        713 TTTTGTT
          1 TTTTGTT

                   
        720 TTTTGTT
          1 TTTTGTT

                   
        727 TTTTGTT
          1 TTTTGTT

                   
        734 TTTTGTT
          1 TTTTGTT

                   
        741 TTTT-TT
          1 TTTTGTT

              
        747 TT
          1 TT

        749 ATTAATTTTG


Statistics
Matches: 29,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
   6    4  0.14
   7   25  0.86

ACGTcount: A:0.00, C:0.00, G:0.11, T:0.89


Consensus pattern (7 bp):   
TTTTGTT

Done.