Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002930.1 Corchorus capsularis cultivar CVL-1 contig02938, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 751

Length: 1253
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.32


Found at i:758 original size:28 final size:28

Alignment explanation


    Indices: 723--799  Score: 118
    Period size: 28  Copynumber: 2.8  Consensus size: 28

        713 AAAATGGACT

                                 *      
        723 AAAAATGACCAAAATGCCCCTTTAATGC
          1 AAAAATGACCAAAATGCCCCTATAATGC

                                   *   *
        751 AAAAATGACCAAAATGCCCCTATGATGT
          1 AAAAATGACCAAAATGCCCCTATAATGC

            *                    
        779 GAAAATGACCAAAATGCCCCT
          1 AAAAATGACCAAAATGCCCCT

        800 GGATGACCTT


Statistics
Matches: 45,  Mismatches: 4, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  28   45  1.00

ACGTcount: A:0.43, C:0.25, G:0.13, T:0.19


Consensus pattern (28 bp):   
AAAAATGACCAAAATGCCCCTATAATGC
Done.