Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002931.1 Corchorus capsularis cultivar CVL-1 contig02939, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2399
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:1796 original size:13 final size:13

Alignment explanation


    Indices: 1778--1809  Score: 55
    Period size: 13  Copynumber: 2.5  Consensus size: 13

       1768 TGCTATATGA

                         
       1778 CCCTCCAACTTGT
          1 CCCTCCAACTTGT

                    *    
       1791 CCCTCCAATTTGT
          1 CCCTCCAACTTGT

                  
       1804 CCCTCC
          1 CCCTCC

       1810 TGATGTGTCA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  13   18  1.00

ACGTcount: A:0.12, C:0.50, G:0.06, T:0.31


Consensus pattern (13 bp):   
CCCTCCAACTTGT
Done.