Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002935.1 Corchorus capsularis cultivar CVL-1 contig02943, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 869

Length: 1449
ACGTcount: A:0.35, C:0.22, G:0.14, T:0.29


Found at i:224 original size:12 final size:12

Alignment explanation


    Indices: 179--217  Score: 51
    Period size: 12  Copynumber: 3.2  Consensus size: 12

        169 AAAATTACCA

                     * *
        179 CCATCGCCATCT
          1 CCATCGCCACCG

                  *     
        191 CCATCGTCACCG
          1 CCATCGCCACCG

                        
        203 CCATCGCCACCG
          1 CCATCGCCACCG

               
        215 CCA
          1 CCA

        218 CGGCCACTAG


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  12   23  1.00

ACGTcount: A:0.18, C:0.54, G:0.13, T:0.15


Consensus pattern (12 bp):   
CCATCGCCACCG
Done.