Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002957.1 Corchorus capsularis cultivar CVL-1 contig02965, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1186
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33

Warning! 3 characters in sequence are not A, C, G, or T


Found at i:559 original size:20 final size:21

Alignment explanation


    Indices: 527--565  Score: 62
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        517 TAGAAAATAC

                          *      
        527 GGTAAAAATGTATATAAAAGT
          1 GGTAAAAATGTATAGAAAAGT

                               
        548 GGTAAAAA-GTATAGAAAA
          1 GGTAAAAATGTATAGAAAA

        566 ATAGCTATAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  20    9  0.53
  21    8  0.47

ACGTcount: A:0.56, C:0.00, G:0.21, T:0.23


Consensus pattern (21 bp):   
GGTAAAAATGTATAGAAAAGT

Found at i:566 original size:21 final size:21

Alignment explanation


    Indices: 527--566  Score: 55
    Period size: 21  Copynumber: 1.9  Consensus size: 21

        517 TAGAAAATAC

                          *      
        527 GGTAAAAATGTATATAAAAGT
          1 GGTAAAAATGTATAAAAAAGT

                                
        548 GGTAAAAA-GTATAGAAAAA
          1 GGTAAAAATGTATA-AAAAA

        567 TAGCTATAAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 2
        0.85            0.05        0.10

Matches are distributed among these distances:
  20    5  0.29
  21   12  0.71

ACGTcount: A:0.57, C:0.00, G:0.20, T:0.23


Consensus pattern (21 bp):   
GGTAAAAATGTATAAAAAAGT
Done.