Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01002964.1 Corchorus capsularis cultivar CVL-1 contig02972, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13857

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--33
2
16.5
2
100
0
66
48
0
0
51
1.00
624--704
32
2.5
32
93
2
135
39
18
6
35
1.76
1111--1165
22
2.5
22
87
0
65
40
12
1
45
1.53
1111--1156
22
2.1
22
95
0
83
45
8
2
43
1.47
1302--1339
19
2.0
19
100
0
76
31
21
10
36
1.87
1650--1711
29
2.1
29
87
0
88
38
6
22
32
1.80
2967--3387
156
2.7
156
88
3
625
33
19
15
31
1.93
4556--4818
107
2.5
105
91
3
404
39
8
9
42
1.67
6125--6156
16
2.1
16
94
5
57
46
9
6
37
1.61
7500--7543
20
2.2
20
83
4
61
56
4
0
38
1.20
7508--7546
20
2.0
20
94
0
69
56
5
0
38
1.22
8692--8728
8
4.2
9
86
13
51
54
0
0
45
1.00
8697--8728
2
16.5
2
93
6
57
53
0
0
46
1.00
8929--8959
5
6.2
5
96
0
53
54
45
0
0
0.99
9268--9296
2
14.5
2
100
0
58
48
0
0
51
1.00
12268--12296
2
14.5
2
100
0
58
51
0
0
48
1.00
13633--13674
22
1.9
22
90
0
66
14
45
9
30
1.77

Tables:   1

The End!