Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002975.1 Corchorus capsularis cultivar CVL-1 contig02983, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 694

Length: 1158
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31


Found at i:1021 original size:13 final size:13

Alignment explanation


    Indices: 976--1022  Score: 51
    Period size: 13  Copynumber: 3.5  Consensus size: 13

        966 GTCATTTTTA

                         
        976 CTCTTTTCTTACT
          1 CTCTTTTCTTACT

                      * * 
        989 CT-TTTTACTCATT
          1 CTCTTTT-CTTACT

                          
       1002 ACTCTTTTCTTACT
          1 -CTCTTTTCTTACT

                   
       1016 CTCTTTT
          1 CTCTTTT

       1023 ATTTATTACC


Statistics
Matches: 27,  Mismatches: 4, Indels: 6
        0.73            0.11        0.16

Matches are distributed among these distances:
  12    4  0.15
  13   13  0.48
  14    6  0.22
  15    4  0.15

ACGTcount: A:0.11, C:0.28, G:0.00, T:0.62


Consensus pattern (13 bp):   
CTCTTTTCTTACT

Found at i:1128 original size:21 final size:22

Alignment explanation


    Indices: 1095--1157  Score: 67
    Period size: 21  Copynumber: 3.0  Consensus size: 22

       1085 ACTAATCACC

                    *             
       1095 TTTTACTCGTTACTGATTACTA
          1 TTTTACTCCTTACTGATTACTA

                          *     * 
       1117 TTTTAC-CCTTACTAATTACCA
          1 TTTTACTCCTTACTGATTACTA

            *   *                
       1138 CTTTGCTCC-TACTGATTACT
          1 TTTTACTCCTTACTGATTACT

       1158 G


Statistics
Matches: 33,  Mismatches: 7, Indels: 3
        0.77            0.16        0.07

Matches are distributed among these distances:
  21   25  0.76
  22    8  0.24

ACGTcount: A:0.22, C:0.25, G:0.06, T:0.46


Consensus pattern (22 bp):   
TTTTACTCCTTACTGATTACTA
Done.