Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002984.1 Corchorus capsularis cultivar CVL-1 contig02992, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 622

Length: 1038
ACGTcount: A:0.40, C:0.13, G:0.14, T:0.32


Found at i:355 original size:13 final size:13

Alignment explanation


    Indices: 337--366  Score: 51
    Period size: 13  Copynumber: 2.3  Consensus size: 13

        327 AATTTTTGCG

                         
        337 TAGAACAATTGGA
          1 TAGAACAATTGGA

                        *
        350 TAGAACAATTGGG
          1 TAGAACAATTGGA

                
        363 TAGA
          1 TAGA

        367 CGCCATATGC


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  13   16  1.00

ACGTcount: A:0.43, C:0.07, G:0.27, T:0.23


Consensus pattern (13 bp):   
TAGAACAATTGGA

Found at i:782 original size:37 final size:37

Alignment explanation


    Indices: 709--782  Score: 96
    Period size: 37  Copynumber: 2.0  Consensus size: 37

        699 GTAATTTGAG

                                *        *       
        709 TTATGAGTAATTTATTCCAACAATTAAGGTAGAGTAA
          1 TTATGAGTAATTTATTCCAAAAATTAAGGCAGAGTAA

                            **                    
        746 TTATGAGTAATTTATTGTAAAACATTAAGGCA-AGTAA
          1 TTATGAGTAATTTATTCCAAAA-ATTAAGGCAGAGTAA

        783 ACGGATAACA


Statistics
Matches: 32,  Mismatches: 4, Indels: 2
        0.84            0.11        0.05

Matches are distributed among these distances:
  37   24  0.75
  38    8  0.25

ACGTcount: A:0.42, C:0.07, G:0.16, T:0.35


Consensus pattern (37 bp):   
TTATGAGTAATTTATTCCAAAAATTAAGGCAGAGTAA
Done.