Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01002998.1 Corchorus capsularis cultivar CVL-1 contig03006, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7199
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.32


Found at i:4588 original size:6 final size:6

Alignment explanation


    Indices: 4579--4610  Score: 64
    Period size: 6  Copynumber: 5.3  Consensus size: 6

       4569 AAAGGGAAGA

                                                 
       4579 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG GA
          1 GAAAAG GAAAAG GAAAAG GAAAAG GAAAAG GA

       4611 GGATTTGTTT


Statistics
Matches: 26,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   26  1.00

ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00


Consensus pattern (6 bp):   
GAAAAG

Found at i:4788 original size:9 final size:9

Alignment explanation


    Indices: 4774--4804  Score: 53
    Period size: 9  Copynumber: 3.4  Consensus size: 9

       4764 AAGCTAAGGC

                     
       4774 TTTTTTTGG
          1 TTTTTTTGG

                     
       4783 TTTTTTTGG
          1 TTTTTTTGG

               *     
       4792 TTTGTTTGG
          1 TTTTTTTGG

                
       4801 TTTT
          1 TTTT

       4805 AAGATATTCG


Statistics
Matches: 20,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.00, C:0.00, G:0.23, T:0.77


Consensus pattern (9 bp):   
TTTTTTTGG
Done.