Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003007.1 Corchorus capsularis cultivar CVL-1 contig03015, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 952

Length: 1587
ACGTcount: A:0.29, C:0.14, G:0.20, T:0.36

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:759 original size:13 final size:13

Alignment explanation


    Indices: 741--768  Score: 56
    Period size: 13  Copynumber: 2.2  Consensus size: 13

        731 ACCATCAAGG

                         
        741 TACTTTTTTTCTC
          1 TACTTTTTTTCTC

                         
        754 TACTTTTTTTCTC
          1 TACTTTTTTTCTC

              
        767 TA
          1 TA

        769 GTACGAATGA


Statistics
Matches: 15,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   15  1.00

ACGTcount: A:0.11, C:0.21, G:0.00, T:0.68


Consensus pattern (13 bp):   
TACTTTTTTTCTC

Found at i:819 original size:2 final size:2

Alignment explanation


    Indices: 812--837  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

        802 ACATGCATGA

                                                  
        812 AT AT AT AT AT AT AT AT AT AT AT AT AT
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT

        838 TACCTTCTGC


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
AT

Done.