Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003014.1 Corchorus capsularis cultivar CVL-1 contig03022, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 795

Length: 1325
ACGTcount: A:0.32, C:0.11, G:0.13, T:0.44


Found at i:268 original size:27 final size:28

Alignment explanation


    Indices: 214--268  Score: 69
    Period size: 29  Copynumber: 2.0  Consensus size: 28

        204 TTACTCAACT

                                **      
        214 AAAAACTCTATTTTTATTTTTCTGTAAA
          1 AAAAACTCTATTTTTATTTTAATGTAAA

                                         
        242 AAAAAGCTCTATTTTTA-TTTAAT-TAAA
          1 AAAAA-CTCTATTTTTATTTTAATGTAAA

        269 TCTAATATCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 3
        0.83            0.07        0.10

Matches are distributed among these distances:
  27    4  0.17
  28    9  0.38
  29   11  0.46

ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47


Consensus pattern (28 bp):   
AAAAACTCTATTTTTATTTTAATGTAAA
Done.