Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003017.1 Corchorus capsularis cultivar CVL-1 contig03025, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 663

Length: 1105
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.28


Found at i:678 original size:27 final size:27

Alignment explanation


    Indices: 639--697  Score: 91
    Period size: 27  Copynumber: 2.2  Consensus size: 27

        629 TGATGTTGGT

                                   *   
        639 TTTGTAGCCCGGCAAGGTAATGGGAGC
          1 TTTGTAGCCCGGCAAGGTAATGGAAGC

                    *          *       
        666 TTTGTAGCTCGGCAAGGTATTGGAAGC
          1 TTTGTAGCCCGGCAAGGTAATGGAAGC

                 
        693 TTTGT
          1 TTTGT

        698 TCTAGAGATG


Statistics
Matches: 29,  Mismatches: 3, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  27   29  1.00

ACGTcount: A:0.20, C:0.15, G:0.34, T:0.31


Consensus pattern (27 bp):   
TTTGTAGCCCGGCAAGGTAATGGAAGC
Done.