Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003019.1 Corchorus capsularis cultivar CVL-1 contig03027, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 831

Length: 1386
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.42


Found at i:1080 original size:27 final size:29

Alignment explanation


    Indices: 1026--1080  Score: 78
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       1016 TTACTCAACT

                                **       
       1026 AAAAACTCTATTTTTATTTTTCTGTAAAA
          1 AAAAACTCTATTTTTATTTTAATGTAAAA

                                        
       1055 AAAAACTCTATTTTTA-TTTAAT-TAAA
          1 AAAAACTCTATTTTTATTTTAATGTAAA

       1081 TCTAATATCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
  27    4  0.17
  28    4  0.17
  29   16  0.67

ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47


Consensus pattern (29 bp):   
AAAAACTCTATTTTTATTTTAATGTAAAA
Done.