Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003021.1 Corchorus capsularis cultivar CVL-1 contig03029, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1696
ACGTcount: A:0.30, C:0.15, G:0.20, T:0.36


Found at i:1005 original size:10 final size:11

Alignment explanation


    Indices: 977--1004  Score: 56
    Period size: 11  Copynumber: 2.5  Consensus size: 11

        967 CGAAAAATAT

                       
        977 AAAAAAATTAA
          1 AAAAAAATTAA

                       
        988 AAAAAAATTAA
          1 AAAAAAATTAA

                  
        999 AAAAAA
          1 AAAAAA

       1005 TCGACTAGAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   17  1.00

ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14


Consensus pattern (11 bp):   
AAAAAAATTAA
Done.