Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003024.1 Corchorus capsularis cultivar CVL-1 contig03032, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1036
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.36


Found at i:671 original size:5 final size:5

Alignment explanation


    Indices: 661--691  Score: 55
    Period size: 5  Copynumber: 6.4  Consensus size: 5

        651 ATCGAAAAAT

                                                  
        661 ATAAA ATAAA ATAAA ATAAA ATAAA A-AAA AT
          1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA AT

        692 TTTCGACCAG


Statistics
Matches: 25,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
   4    4  0.16
   5   21  0.84

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (5 bp):   
ATAAA

Found at i:681 original size:15 final size:14

Alignment explanation


    Indices: 655--691  Score: 56
    Period size: 15  Copynumber: 2.6  Consensus size: 14

        645 AGTTATATCG

                 *        
        655 AAAAATATAAAATA
          1 AAAAAAATAAAATA

                           
        669 AAATAAAATAAAATA
          1 AAA-AAAATAAAATA

                    
        684 AAAAAAAT
          1 AAAAAAAT

        692 TTTCGACCAG


Statistics
Matches: 21,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  14    8  0.38
  15   13  0.62

ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19


Consensus pattern (14 bp):   
AAAAAAATAAAATA
Done.