Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003025.1 Corchorus capsularis cultivar CVL-1 contig03033, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 968

Length: 1614
ACGTcount: A:0.27, C:0.17, G:0.22, T:0.34


Found at i:264 original size:30 final size:30

Alignment explanation


    Indices: 228--286  Score: 102
    Period size: 30  Copynumber: 2.0  Consensus size: 30

        218 CAAGGGGGAG

                                           
        228 GGAATGATGCGCCCAAGG-CTTATCATGGAA
          1 GGAATGATGCG-CCAAGGACTTATCATGGAA

                                         
        258 GGAATGATGCGCCAAGGACTTATCATGGA
          1 GGAATGATGCGCCAAGGACTTATCATGGA

        287 CTTGAAGACA


Statistics
Matches: 28,  Mismatches: 0, Indels: 2
        0.93            0.00        0.07

Matches are distributed among these distances:
  29    6  0.21
  30   22  0.79

ACGTcount: A:0.31, C:0.19, G:0.31, T:0.20


Consensus pattern (30 bp):   
GGAATGATGCGCCAAGGACTTATCATGGAA
Done.