Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003026.1 Corchorus capsularis cultivar CVL-1 contig03034, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 867

Length: 1445
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29


Found at i:1309 original size:33 final size:33

Alignment explanation


    Indices: 1272--1378  Score: 135
    Period size: 33  Copynumber: 3.2  Consensus size: 33

       1262 AGCACTAGTG

                    *            *           
       1272 ACCGGCCATGCGACTTGGAGAAGTCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                      *    *       *         
       1305 ACCGGCCACGTGACTCGGAGATGCCCGGCCAAC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                          *    *             
       1338 ACCGGCCACGCGACATGGACATGTCCGGCC-AC
          1 ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC

                     
       1370 AACCGGCCA
          1 -ACCGGCCA

       1379 TCGCTAGGCG


Statistics
Matches: 63,  Mismatches: 10, Indels: 2
        0.84            0.13        0.03

Matches are distributed among these distances:
  32    2  0.03
  33   61  0.97

ACGTcount: A:0.23, C:0.38, G:0.29, T:0.09


Consensus pattern (33 bp):   
ACCGGCCACGCGACTTGGAGATGTCCGGCCAAC
Done.