Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003031.1 Corchorus capsularis cultivar CVL-1 contig03039, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 929

Length: 1549
ACGTcount: A:0.30, C:0.22, G:0.17, T:0.31


Found at i:995 original size:18 final size:18

Alignment explanation


    Indices: 972--1016  Score: 56
    Period size: 19  Copynumber: 2.4  Consensus size: 18

        962 TCTCTTCCTC

                               
        972 TGTTTTTTCA-TTTTTCTG
          1 TGTTTTTT-ATTTTTTCTG

                               
        990 TGTTTTTGTATTTTTTCTG
          1 TGTTTTT-TATTTTTTCTG

             *      
       1009 TATTTTTT
          1 TGTTTTTT

       1017 TACTGCCCTC


Statistics
Matches: 24,  Mismatches: 1, Indels: 4
        0.83            0.03        0.14

Matches are distributed among these distances:
  18    9  0.38
  19   15  0.62

ACGTcount: A:0.07, C:0.07, G:0.11, T:0.76


Consensus pattern (18 bp):   
TGTTTTTTATTTTTTCTG
Done.