Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003041.1 Corchorus capsularis cultivar CVL-1 contig03049, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1058
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.36


Found at i:68 original size:2 final size:2

Alignment explanation


    Indices: 63--88  Score: 52
    Period size: 2  Copynumber: 13.0  Consensus size: 2

         53 TTGTGAAGAT

                                                  
         63 TA TA TA TA TA TA TA TA TA TA TA TA TA
          1 TA TA TA TA TA TA TA TA TA TA TA TA TA

         89 AAGTTATAGT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   24  1.00

ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50


Consensus pattern (2 bp):   
TA

Found at i:229 original size:21 final size:20

Alignment explanation


    Indices: 187--230  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 20

        177 TCTTGTAATC

                             *  
        187 TAAAATTACTAAAAAAGTTA
          1 TAAAATTACTAAAAAAGCTA

                     *     *     
        207 TAAAAGTTATTAAAATAGCTA
          1 TAAAA-TTACTAAAAAAGCTA

               
        228 TAA
          1 TAA

        231 TGCTTTCCAC


Statistics
Matches: 20,  Mismatches: 3, Indels: 1
        0.83            0.12        0.04

Matches are distributed among these distances:
  20    5  0.25
  21   15  0.75

ACGTcount: A:0.57, C:0.05, G:0.07, T:0.32


Consensus pattern (20 bp):   
TAAAATTACTAAAAAAGCTA
Done.