Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003047.1 Corchorus capsularis cultivar CVL-1 contig03055, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 759

Length: 1265
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35


Found at i:668 original size:40 final size:40

Alignment explanation


    Indices: 622--705  Score: 123
    Period size: 40  Copynumber: 2.1  Consensus size: 40

        612 ATTGAATAAA

                      *   *  *     *                
        622 ACATAATTACCTAATTACTTAATTTAAATGAAATAAAAAT
          1 ACATAATTACATAACTAATTAATCTAAATGAAATAAAAAT

                                                  * 
        662 ACATAATTACATAACTAATTAATCTAAATGAAATAAAACT
          1 ACATAATTACATAACTAATTAATCTAAATGAAATAAAAAT

                
        702 ACAT
          1 ACAT

        706 GTTTACCCTT


Statistics
Matches: 39,  Mismatches: 5, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  40   39  1.00

ACGTcount: A:0.54, C:0.12, G:0.02, T:0.32


Consensus pattern (40 bp):   
ACATAATTACATAACTAATTAATCTAAATGAAATAAAAAT
Done.