Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000306.1 Corchorus capsularis cultivar CVL-1 contig00306, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5621
ACGTcount: A:0.33, C:0.19, G:0.17, T:0.31


Found at i:5458 original size:19 final size:18

Alignment explanation


    Indices: 5425--5461  Score: 56
    Period size: 19  Copynumber: 2.0  Consensus size: 18

       5415 TTGAAATAAT

                              
       5425 TCTTCAATGATCTTCAAG
          1 TCTTCAATGATCTTCAAG

                     *         
       5443 TCTTCAAATTATCTTCAAG
          1 TCTTC-AATGATCTTCAAG

       5462 AAATCTTCAA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  18    5  0.29
  19   12  0.71

ACGTcount: A:0.30, C:0.22, G:0.08, T:0.41


Consensus pattern (18 bp):   
TCTTCAATGATCTTCAAG
Done.