Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003062.1 Corchorus capsularis cultivar CVL-1 contig03070, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 799

Length: 1333
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:464 original size:30 final size:30

Alignment explanation


    Indices: 430--486  Score: 87
    Period size: 30  Copynumber: 1.9  Consensus size: 30

        420 GAATGAATTG

                              *           
        430 ATCCTGCTGTAAACAAACTGTTGACTTTGA
          1 ATCCTGCTGTAAACAAACAGTTGACTTTGA

                         * *           
        460 ATCCTGCTGTAAATACACAGTTGACTT
          1 ATCCTGCTGTAAACAAACAGTTGACTT

        487 ATTTCATCAC


Statistics
Matches: 24,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  30   24  1.00

ACGTcount: A:0.30, C:0.21, G:0.16, T:0.33


Consensus pattern (30 bp):   
ATCCTGCTGTAAACAAACAGTTGACTTTGA
Done.