Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003082.1 Corchorus capsularis cultivar CVL-1 contig03090, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 773

Length: 1289
ACGTcount: A:0.32, C:0.11, G:0.11, T:0.46


Found at i:478 original size:25 final size:26

Alignment explanation


    Indices: 427--478  Score: 79
    Period size: 26  Copynumber: 2.0  Consensus size: 26

        417 TTACTCAACT

                               **     
        427 AAAAACTCTATTTTTATTTTCTGTAA
          1 AAAAACTCTATTTTTATTTAATGTAA

                                      
        453 AAAAACTCTATTTTTATTTAAT-TAA
          1 AAAAACTCTATTTTTATTTAATGTAA

             
        478 A
          1 A

        479 TCTAATTTCC


Statistics
Matches: 24,  Mismatches: 2, Indels: 1
        0.89            0.07        0.04

Matches are distributed among these distances:
  25    4  0.17
  26   20  0.83

ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48


Consensus pattern (26 bp):   
AAAAACTCTATTTTTATTTAATGTAA
Done.