Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003106.1 Corchorus capsularis cultivar CVL-1 contig03114, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32


Found at i:595 original size:44 final size:44

Alignment explanation


    Indices: 532--622  Score: 155
    Period size: 44  Copynumber: 2.1  Consensus size: 44

        522 CATTTTGTGC

                                  *            *        
        532 TTTCACCATTTCTTCAATATTTTCGGTGGTAGACGCGTTCATTA
          1 TTTCACCATTTCTTCAATATTTCCGGTGGTAGACGAGTTCATTA

                                          *             
        576 TTTCACCATTTCTTCAATATTTCCGGTGGTGGACGAGTTCATTA
          1 TTTCACCATTTCTTCAATATTTCCGGTGGTAGACGAGTTCATTA

               
        620 TTT
          1 TTT

        623 TACTAATTGC


Statistics
Matches: 44,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  44   44  1.00

ACGTcount: A:0.20, C:0.20, G:0.16, T:0.44


Consensus pattern (44 bp):   
TTTCACCATTTCTTCAATATTTCCGGTGGTAGACGAGTTCATTA
Done.