Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003113.1 Corchorus capsularis cultivar CVL-1 contig03121, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 960

Length: 1600
ACGTcount: A:0.33, C:0.21, G:0.18, T:0.28


Found at i:564 original size:8 final size:8

Alignment explanation


    Indices: 551--575  Score: 50
    Period size: 8  Copynumber: 3.1  Consensus size: 8

        541 AACTTCAATG

                    
        551 GTCTTCAA
          1 GTCTTCAA

                    
        559 GTCTTCAA
          1 GTCTTCAA

                    
        567 GTCTTCAA
          1 GTCTTCAA

             
        575 G
          1 G

        576 ATGAGTTCAA


Statistics
Matches: 17,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   8   17  1.00

ACGTcount: A:0.24, C:0.24, G:0.16, T:0.36


Consensus pattern (8 bp):   
GTCTTCAA
Done.