Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003119.1 Corchorus capsularis cultivar CVL-1 contig03127, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 610

Length: 1018
ACGTcount: A:0.33, C:0.16, G:0.18, T:0.32


Found at i:118 original size:49 final size:49

Alignment explanation


    Indices: 3--211  Score: 292
    Period size: 49  Copynumber: 4.2  Consensus size: 49

          1 AG

                    * *  *                 *               *  
          3 GTAAAAATTAGTGCCTTCCGTCCGGGAAGGGTGCTTTTGGGAAATAGAAA
          1 GTAAAAATGAATGGCTTCCGTCCGGGAAGGGCGC-TTTGGGAAATAGCAA

                 *  *  *                    *                
         53 GTAAAGATAAACGGCTTCCGTCCGGGAAGGGCACTTTGGGAAATAGCAA
          1 GTAAAAATGAATGGCTTCCGTCCGGGAAGGGCGCTTTGGGAAATAGCAA

                                  *                     *    
        102 GTAAAAATGAATGGCTTCCGTCTGGGAAGGGCGCTTTGGGAAATTGCAA
          1 GTAAAAATGAATGGCTTCCGTCCGGGAAGGGCGCTTTGGGAAATAGCAA

                                  *                          
        151 GTAAAAATGAATGGCTTCCGTCTGGGAAGGGCGCTTTGGGAAATAGCAA
          1 GTAAAAATGAATGGCTTCCGTCCGGGAAGGGCGCTTTGGGAAATAGCAA

                        
        200 GTAAAAACTGAA
          1 GTAAAAA-TGAA

        212 AATTGAAAGA


Statistics
Matches: 143,  Mismatches: 15, Indels: 2
        0.89            0.09        0.01

Matches are distributed among these distances:
  49  112  0.78
  50   31  0.22

ACGTcount: A:0.32, C:0.15, G:0.31, T:0.22


Consensus pattern (49 bp):   
GTAAAAATGAATGGCTTCCGTCCGGGAAGGGCGCTTTGGGAAATAGCAA

Done.