Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003135.1 Corchorus capsularis cultivar CVL-1 contig03143, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1001
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.28


Found at i:402 original size:16 final size:16

Alignment explanation


    Indices: 381--414  Score: 50
    Period size: 16  Copynumber: 2.1  Consensus size: 16

        371 ATTTGGACCT

                            
        381 TGCAAAGAAAAAGAAA
          1 TGCAAAGAAAAAGAAA

                   * *      
        397 TGCAAAGCACAAGAAA
          1 TGCAAAGAAAAAGAAA

              
        413 TG
          1 TG

        415 TTCCCCAAGG


Statistics
Matches: 16,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  16   16  1.00

ACGTcount: A:0.59, C:0.12, G:0.21, T:0.09


Consensus pattern (16 bp):   
TGCAAAGAAAAAGAAA
Done.