Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000314.1 Corchorus capsularis cultivar CVL-1 contig00314, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3486
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34


Found at i:1876 original size:31 final size:31

Alignment explanation


    Indices: 1821--1879  Score: 82
    Period size: 31  Copynumber: 1.9  Consensus size: 31

       1811 CTCAATTGAA

                    *      *   *           
       1821 CCAATCTTGTGAATATAAGGACTAAATTAAC
          1 CCAATCTTCTGAATACAAGAACTAAATTAAC

                        *               
       1852 CCAATCTTCTGAGTACAAGAACTAAATT
          1 CCAATCTTCTGAATACAAGAACTAAATT

       1880 GATCGTTCTT


Statistics
Matches: 24,  Mismatches: 4, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  31   24  1.00

ACGTcount: A:0.41, C:0.19, G:0.12, T:0.29


Consensus pattern (31 bp):   
CCAATCTTCTGAATACAAGAACTAAATTAAC
Done.