Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003150.1 Corchorus capsularis cultivar CVL-1 contig03158, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1322
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38


Found at i:1228 original size:28 final size:28

Alignment explanation


    Indices: 1177--1246  Score: 115
    Period size: 28  Copynumber: 2.5  Consensus size: 28

       1167 GTCCAAGGGT

                                        
       1177 ATTTTGGTCA-TTTTTGCACCCAGGGGC
          1 ATTTTGGTCATTTTTTGCACCCAGGGGC

                                *       
       1204 ATTTTGGTCATTTTTTGCACTCAGGGGC
          1 ATTTTGGTCATTTTTTGCACCCAGGGGC

                 *         
       1232 ATTTTAGTCATTTTT
          1 ATTTTGGTCATTTTT

       1247 AGGTTCACCT


Statistics
Matches: 40,  Mismatches: 2, Indels: 1
        0.93            0.05        0.02

Matches are distributed among these distances:
  27   10  0.25
  28   30  0.75

ACGTcount: A:0.16, C:0.17, G:0.21, T:0.46


Consensus pattern (28 bp):   
ATTTTGGTCATTTTTTGCACCCAGGGGC
Done.