Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000316.1 Corchorus capsularis cultivar CVL-1 contig00316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3147
ACGTcount: A:0.38, C:0.18, G:0.14, T:0.30


Found at i:1554 original size:6 final size:6

Alignment explanation


    Indices: 1543--1575  Score: 66
    Period size: 6  Copynumber: 5.5  Consensus size: 6

       1533 AAATCAAAGC

                                                  
       1543 AAATCT AAATCT AAATCT AAATCT AAATCT AAA
          1 AAATCT AAATCT AAATCT AAATCT AAATCT AAA

       1576 GCAGATTAAT


Statistics
Matches: 27,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   6   27  1.00

ACGTcount: A:0.55, C:0.15, G:0.00, T:0.30


Consensus pattern (6 bp):   
AAATCT

Done.