Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003167.1 Corchorus capsularis cultivar CVL-1 contig03175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 603

Length: 1006
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.39


Found at i:717 original size:25 final size:26

Alignment explanation


    Indices: 674--724  Score: 86
    Period size: 25  Copynumber: 2.0  Consensus size: 26

        664 CTCTTAATAT

                                *     
        674 CAACTGCATTTTTTAGTAACCTTGAA
          1 CAACTGCATTTTTTAGTAACATTGAA

                                      
        700 CAACTGCA-TTTTTAGTAACATTGAA
          1 CAACTGCATTTTTTAGTAACATTGAA

        725 TAAGAATATT


Statistics
Matches: 24,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  25   16  0.67
  26    8  0.33

ACGTcount: A:0.33, C:0.18, G:0.12, T:0.37


Consensus pattern (26 bp):   
CAACTGCATTTTTTAGTAACATTGAA
Done.