Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01003168.1 Corchorus capsularis cultivar CVL-1 contig03176, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  1809

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1012--1073
25
2.3
26
86
8
81
22
19
6
51
1.69
1012--1088
25
2.8
28
82
9
79
20
22
6
50
1.71
1171--1299
7
17.7
7
71
15
68
18
23
2
55
1.54
1202--1336
29
4.7
29
70
17
86
20
20
2
55
1.56
1255--1302
22
2.2
21
89
10
71
18
22
0
58
1.39
1157--1316
73
2.2
72
85
6
209
18
22
2
56
1.54
1157--1288
36
3.6
36
91
2
210
17
22
3
56
1.54
1284--1396
35
3.2
35
80
0
145
23
19
5
52
1.66
1344--1386
21
2.1
20
86
4
59
20
20
4
53
1.63
1663--1726
16
4.1
16
66
11
51
15
21
6
56
1.62

Tables:   1

The End!