Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003169.1 Corchorus capsularis cultivar CVL-1 contig03177, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 709

Length: 1183
ACGTcount: A:0.39, C:0.15, G:0.16, T:0.30


Found at i:1019 original size:20 final size:18

Alignment explanation


    Indices: 994--1036  Score: 59
    Period size: 18  Copynumber: 2.3  Consensus size: 18

        984 TTTAGGTATT

                                
        994 TATATTTTAAATATTTTATA
          1 TATATTTT--ATATTTTATA

                    *         
       1014 TATATTTTTTATTTTATA
          1 TATATTTTATATTTTATA

                 
       1032 TATAT
          1 TATAT

       1037 AATATATATA


Statistics
Matches: 22,  Mismatches: 1, Indels: 2
        0.88            0.04        0.08

Matches are distributed among these distances:
  18   14  0.64
  20    8  0.36

ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65


Consensus pattern (18 bp):   
TATATTTTATATTTTATA
Done.