Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000318.1 Corchorus capsularis cultivar CVL-1 contig00318, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 625

Length: 1042
ACGTcount: A:0.40, C:0.09, G:0.11, T:0.39


Found at i:336 original size:26 final size:26

Alignment explanation


    Indices: 260--336  Score: 68
    Period size: 26  Copynumber: 3.0  Consensus size: 26

        250 TAGCTTACAT

                *        *  * *       
        260 ATTATTAATGATGAAAAGCTACTAAA
          1 ATTACTAATGATGTAAGGTTACTAAA

                 *              * *    
        286 ATTACAACAT-AT-TAAGGTAAATAAA
          1 ATTACTA-ATGATGTAAGGTTACTAAA

                                      
        311 ATTACTAATGATGTAAGGTTACTAAA
          1 ATTACTAATGATGTAAGGTTACTAAA

        337 TTTATGGAAA


Statistics
Matches: 38,  Mismatches: 10, Indels: 6
        0.70            0.19        0.11

Matches are distributed among these distances:
  24    2  0.05
  25   16  0.42
  26   18  0.47
  27    2  0.05

ACGTcount: A:0.49, C:0.08, G:0.12, T:0.31


Consensus pattern (26 bp):   
ATTACTAATGATGTAAGGTTACTAAA
Done.