Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003185.1 Corchorus capsularis cultivar CVL-1 contig03193, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 893

Length: 1489
ACGTcount: A:0.39, C:0.11, G:0.21, T:0.28


Found at i:403 original size:21 final size:21

Alignment explanation


    Indices: 348--417  Score: 79
    Period size: 21  Copynumber: 3.3  Consensus size: 21

        338 TATCTAAAAA

                    *           *
        348 AGTAAAATGGTAATCAGTAAA
          1 AGTAAAATAGTAATCAGTAAG

                    *             
        369 ATGTAAAAGA-TAATCAGTAAG
          1 A-GTAAAATAGTAATCAGTAAG

                           *     
        390 AGTAAAATAGTAATCGGTAAG
          1 AGTAAAATAGTAATCAGTAAG

              *    
        411 AGCAAAA
          1 AGTAAAA

        418 GCGATAATAG


Statistics
Matches: 41,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
  20    7  0.17
  21   28  0.68
  22    6  0.15

ACGTcount: A:0.53, C:0.06, G:0.20, T:0.21


Consensus pattern (21 bp):   
AGTAAAATAGTAATCAGTAAG
Done.