Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000320.1 Corchorus capsularis cultivar CVL-1 contig00320, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 688

Length: 1147
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.33


Found at i:509 original size:56 final size:53

Alignment explanation


    Indices: 442--556  Score: 167
    Period size: 54  Copynumber: 2.1  Consensus size: 53

        432 GAAAGGGGGC

                                                                   
        442 AATCAGTAATTAAGTAAAAAGAGATTAATCAAGAGTCAAAGTAACAGTAATCAGT
          1 AATCAGTAATTAAGT-AAAAGAGATTAATC-AGAGTCAAAGTAACAGTAATCAGT

                                               *  *   **          
        497 AAATCAGTAATTAAGTAAAAGAGATTAATCAGAGTTAAGGTAGTAGTAATCAGT
          1 -AATCAGTAATTAAGTAAAAGAGATTAATCAGAGTCAAAGTAACAGTAATCAGT

                  
        551 AATCAG
          1 AATCAG

        557 GTAAAAGATA


Statistics
Matches: 55,  Mismatches: 4, Indels: 3
        0.89            0.06        0.05

Matches are distributed among these distances:
  53    6  0.11
  54   20  0.36
  55   14  0.25
  56   15  0.27

ACGTcount: A:0.49, C:0.08, G:0.18, T:0.25


Consensus pattern (53 bp):   
AATCAGTAATTAAGTAAAAGAGATTAATCAGAGTCAAAGTAACAGTAATCAGT
Done.