Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003220.1 Corchorus capsularis cultivar CVL-1 contig03228, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 634

Length: 1057
ACGTcount: A:0.37, C:0.17, G:0.21, T:0.25


Found at i:730 original size:17 final size:16

Alignment explanation


    Indices: 688--735  Score: 62
    Period size: 15  Copynumber: 3.0  Consensus size: 16

        678 GAGTTTCAAG

                            
        688 TAAGTAGACAAGAGTC
          1 TAAGTAGACAAGAGTC

              * *           
        704 T-TGGAGACAAGAGTC
          1 TAAGTAGACAAGAGTC

                             
        719 TCAAGTAGACAAGAGTC
          1 T-AAGTAGACAAGAGTC

        736 CAAAAGAAAA


Statistics
Matches: 26,  Mismatches: 4, Indels: 3
        0.79            0.12        0.09

Matches are distributed among these distances:
  15   13  0.50
  16    1  0.04
  17   12  0.46

ACGTcount: A:0.40, C:0.15, G:0.27, T:0.19


Consensus pattern (16 bp):   
TAAGTAGACAAGAGTC
Done.