Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01003223.1 Corchorus capsularis cultivar CVL-1 contig03231, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 616

Length: 1027
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.30


Found at i:119 original size:36 final size:36

Alignment explanation


    Indices: 67--172  Score: 162
    Period size: 36  Copynumber: 2.9  Consensus size: 36

         57 AATTTCAGAA

                *                               
         67 AAGGAAATTAAGTAGAGTCAATAAAAGACTTAATTC
          1 AAGGTAATTAAGTAGAGTCAATAAAAGACTTAATTC

                                                
        103 AAGGTAATTAAGTAGAGTCAATAAAAGACTTAATTC
          1 AAGGTAATTAAGTAGAGTCAATAAAAGACTTAATTC

             *                                  
        139 AGGGTAATTAAGT-GAAGTCAAT-AAAGAACTTAAT
          1 AAGGTAATTAAGTAG-AGTCAATAAAAG-ACTTAAT

        173 CTAAAAAGAG


Statistics
Matches: 66,  Mismatches: 2, Indels: 4
        0.92            0.03        0.06

Matches are distributed among these distances:
  35    5  0.08
  36   61  0.92

ACGTcount: A:0.48, C:0.08, G:0.18, T:0.26


Consensus pattern (36 bp):   
AAGGTAATTAAGTAGAGTCAATAAAAGACTTAATTC
Done.